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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 30 8

  2. NMDC_documentation NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 81 repositories
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 9 0 148 17 Updated Mar 8, 2025
  • nmdc-edge Public

    Web-based interface to the NMDC EDGE platform

    microbiomedata/nmdc-edge’s past year of commit activity
    JavaScript 4 0 77 (1 issue needs help) 0 Updated Mar 8, 2025
  • metaPro Public

    Workflow for meta-proteomics analysis

    microbiomedata/metaPro’s past year of commit activity
    Python 6 BSD-2-Clause 3 7 3 Updated Mar 8, 2025
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    HTML 7 5 110 (2 issues need help) 15 Updated Mar 8, 2025
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 2 60 2 Updated Mar 7, 2025
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    microbiomedata/nmdc_mass_spectrometry_metadata_generation’s past year of commit activity
    Python 0 0 4 1 Updated Mar 7, 2025
  • mg_annotation Public

    Metagenome Annotation Workflow

    microbiomedata/mg_annotation’s past year of commit activity
    WDL 4 7 3 2 Updated Mar 7, 2025
  • metaT Public

    Metatranscriptomics workflow

    microbiomedata/metaT’s past year of commit activity
    WDL 4 2 6 0 Updated Mar 7, 2025
  • ontology-loader Public
    microbiomedata/ontology-loader’s past year of commit activity
    Python 0 0 0 0 Updated Mar 6, 2025
  • metaMAGs Public

    Workflow for metagenome assembled genomes generation.

    microbiomedata/metaMAGs’s past year of commit activity
    Python 6 4 1 0 Updated Mar 6, 2025
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