Merge pull request #49 from geneontology/publicize_causalmf

publicize causalmf parameter used by the pathway widget to filter out…
geneontology · Apr 21, 2023 · b38a0ae · b38a0ae
2 parents 2392b69 + b29ed47
commit b38a0ae
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/app/routers/pathway_widget.py b/app/routers/pathway_widget.py
@@ -22,8 +22,10 @@ async def get_gocams_by_geneproduct_id(
     ),
     causalmf: int = Query(
         None,
-        description="Used by the pathway widget to get GP models with 2 causal MFs",
-        include_in_schema=False,
+        deprecated=True,
+        description="Used by the pathway widget The model has a chain of at least three functions connected "
+                    "by at least two consecutive causal relation edges.  One of these functions is enabled_by "
+                    "this input gene"
     ),
 ):
     """

diff --git a/tests/unit/test_prefix_endpoints.py b/tests/unit/test_prefix_endpoints.py
@@ -8,7 +8,7 @@
 test_client = TestClient(app)
 logger = logging.getLogger(__name__)
 
-gene_ids = ["ZFIN:ZDB-GENE-980526-388", "ZFIN:ZDB-GENE-990415-8", "MGI:3588192", "FB:FBgn0003731"]
+gene_ids = ["ZFIN:ZDB-GENE-980526-388", "ZFIN:ZDB-GENE-990415-8", "MGI:3588192", "MGI:MGI:3588192", "FB:FBgn0003731"]
 go_ids = ["GO:0008150"]
 subsets = ["goslim_agr"]
 shared_ancestors = [("GO:0006259", "GO:0046483")]