reformatted files

tardis/gui/datahandler.py

@@ -39,15 +39,15 @@ class Node(object):
 
     Attributes
     ----------
-    parent : None/Node 
+    parent : None/Node
         The parent of the node.
     children : list of Node
         The children of the node.
-    data : list of string 
+    data : list of string
         The data stored on the node. Can be a key or a value.
-    siblings : dictionary 
-        A dictionary of nodes that are siblings of this node. The 
-        keys are the values of the nodes themselves. This is 
+    siblings : dictionary
+        A dictionary of nodes that are siblings of this node. The
+        keys are the values of the nodes themselves. This is
         used to keep track of which value the user has selected
         if the parent of this node happens to be a key that can
         take values from a list.
@@ -60,8 +60,8 @@ def __init__(self, data, parent=None):
         ----------
         data : list of string
             The data that is intended to be stored on the node.
-        parent : Node 
-            Another node which is the parent of this node. The 
+        parent : Node
+            Another node which is the parent of this node. The
             root node has parent set to None.
 
         Note
@@ -164,10 +164,10 @@ class TreeModel(QtCore.QAbstractItemModel):
     ----------
     root : Node
         Root node of the tree.
-    disabledNodes : list of Node 
+    disabledNodes : list of Node
         List of leaf nodes that are not editable currently.
-    typenodes : list of Node 
-        List of nodes that correspond to keys that set container 
+    typenodes : list of Node
+        List of nodes that correspond to keys that set container
         types. Look at tardis configuration template. These are the
         nodes that have values that can be set from a list.
     """
@@ -177,9 +177,9 @@ def __init__(self, dictionary, parent=None):
 
         Parameters
         ----------
-        dictionary : dictionary            
+        dictionary : dictionary
             The dictionary that needs to be converted to the tree.
-        parent : None 
+        parent : None
             Used to instantiate the QAbstractItemModel
         """
         QtCore.QAbstractItemModel.__init__(self, parent)
@@ -347,7 +347,7 @@ def dict_to_tree(self, dictionary, root):
         ----------
         dictionary : dictionary
             The dictionary that is to be converted to the tree.
-        root : Node 
+        root : Node
             The root node of the tree.
         """
         # Construct tree with all nodes

tardis/gui/interface.py

@@ -36,7 +36,7 @@ def show(model):
     show method is called.
 
     Finally the eventloop is started using IPython functions (which start them
-    consistently) if they were imported. Otherwise it is started explicitly. 
+    consistently) if they were imported. Otherwise it is started explicitly.
     """
     if importFailed:
         app = QtWidgets.QApplication([])

tardis/gui/widgets.py

@@ -391,7 +391,7 @@ def match_dicts(self, dict1, dict2):  # dict1<=dict2
             The template dictionary with all default values set. This
             one may have some keys missing that are present in the
             `dict1`. Such keys will be appended.
-            
+
         Raises
         ------
         IOError

tardis/io/config_reader.py

@@ -340,7 +340,7 @@ def quantity_representer(dumper, data):
 def cns_representer(dumper, data):
     """
     Represents Configuration as dict
-    
+
     Parameters
     ----------
     dumper :

tardis/io/decay.py

@@ -106,7 +106,7 @@ def as_atoms(self):
         Returns
         -------
         pandas.DataFrame
-            Merged isotope abundances 
+            Merged isotope abundances
         """
 
         return self.groupby("atomic_number").sum()
@@ -117,7 +117,7 @@ def merge(self, other, normalize=True):
 
         Parameters
         ----------
-        other : pd.DataFrame 
+        other : pd.DataFrame
         normalize : bool
             If true, resultant dataframe will be normalized
 

tardis/io/util.py

@@ -205,13 +205,13 @@ def to_hdf_util(
     ):
         """
         A function to uniformly store TARDIS data to an HDF file.
-        
+
         Scalars will be stored in a Series under path/scalars
         1D arrays will be stored under path/property_name as distinct Series
         2D arrays will be stored under path/property_name as distinct DataFrames
-        
+
         Units will be stored as their CGS value
-        
+
         Parameters
         ----------
         path_or_buf : str or pandas.io.pytables.HDFStore
@@ -223,7 +223,7 @@ def to_hdf_util(
             stored.
         overwrite : bool
             If the HDF file path already exists, whether to overwrite it or not
-        
+
         Notes
         -----
         `overwrite` option doesn't have any effect when `path_or_buf` is an

tardis/plasma/properties/atomic.py

@@ -30,7 +30,7 @@ class Levels(BaseAtomicDataProperty):
     """
     Attributes
     ----------
-    levels : pandas.MultiIndex 
+    levels : pandas.MultiIndex
         (atomic_number, ion_number, level_number)
         Index of filtered atomic data. Index used for all other attribute dataframes for this class
     excitation_energy : pandas.DataFrame, dtype float
@@ -70,7 +70,7 @@ class Lines(BaseAtomicDataProperty):
     """
     Attributes
     ----------
-    lines : pandas.DataFrame 
+    lines : pandas.DataFrame
         Atomic lines data. Columns are wavelength, atomic_number,ion_number,
         f_ul, f_lu, level_number_lower, level_number_upper, nu, B_lu, B_ul, A_ul,
         wavelength. Index is line_id.
@@ -192,7 +192,7 @@ class IonizationData(BaseAtomicDataProperty):
     """
     Attributes
     ----------
-    ionization_data : pandas.Series 
+    ionization_data : pandas.Series
         Holding ionization energies
         Indexed by atomic number, ion number.
     """

tardis/plasma/properties/ion_population.py

@@ -270,7 +270,7 @@ class IonNumberDensity(ProcessingPlasmaProperty):
     for the electron densities are not similar to within the threshold
     value, a new guess for the value of the electron density is chosen
     and the process is repeated.
-    
+
     Attributes
     ----------
     ion_number_density : pandas.DataFrame, dtype float
@@ -401,7 +401,7 @@ class IonNumberDensityHeNLTE(ProcessingPlasmaProperty):
     for the electron densities are not similar to within the threshold
     value, a new guess for the value of the electron density is chosen
     and the process is repeated.
-    
+
     Attributes
     ----------
     ion_number_density : pandas.DataFrame, dtype float

tardis/widgets/tests/test_shell_info.py

@@ -29,7 +29,9 @@ def simulation_shell_info(simulation_verysimple):
 
 @pytest.fixture(scope="class")
 def hdf_shell_info(hdf_file_path, simulation_verysimple):
-    simulation_verysimple.to_hdf(hdf_file_path, overwrite=True)  # save sim at hdf_file_path
+    simulation_verysimple.to_hdf(
+        hdf_file_path, overwrite=True
+    )  # save sim at hdf_file_path
     return HDFShellInfo(hdf_file_path)