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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    HTML 2.4k 570

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 218 189

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 157 29

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    58 12

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    HTML 32 10

  6. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 29 24

Repositories

Showing 10 of 53 repositories
  • snakemake-interface-software-deployment-plugins Public

    A stable interface for Snakemake software deployment plugins

    snakemake/snakemake-interface-software-deployment-plugins’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 6, 2025
  • snakemake-software-deployment-plugin-envmodules Public

    Snakemake software deployment plugin for environment modules

    snakemake/snakemake-software-deployment-plugin-envmodules’s past year of commit activity
    Python 0 0 0 0 Updated Mar 6, 2025
  • snakemake-plugin-catalog Public

    An automatically updated catalog of Snakemake plugins and their documentation

    snakemake/snakemake-plugin-catalog’s past year of commit activity
    Python 2 MIT 3 1 2 Updated Mar 6, 2025
  • snakemake-executor-plugin-kubernetes Public

    A snakemake executor plugin for submission of jobs to Kubernetes

    snakemake/snakemake-executor-plugin-kubernetes’s past year of commit activity
    Python 3 MIT 9 4 4 Updated Mar 6, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 29 MIT 24 32 2 Updated Mar 6, 2025
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    HTML 2,393 MIT 570 1,101 (1 issue needs help) 92 Updated Mar 6, 2025
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 218 189 24 28 Updated Mar 6, 2025
  • poetry-snakemake-plugin Public

    Plugin for poetry that adds snakemake specific functionality

    snakemake/poetry-snakemake-plugin’s past year of commit activity
    Python 5 0 1 2 Updated Mar 6, 2025
  • snakemake-storage-plugin-s3 Public

    A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)

    snakemake/snakemake-storage-plugin-s3’s past year of commit activity
    Python 2 MIT 11 3 2 Updated Mar 6, 2025
  • snakemake-executor-plugin-aws-batch Public

    A Snakemake executor plugin for AWS Batch

    snakemake/snakemake-executor-plugin-aws-batch’s past year of commit activity
    Python 6 MIT 4 3 0 Updated Mar 6, 2025
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