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doc update
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petersenpeter committed Apr 8, 2020
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8 changes: 3 additions & 5 deletions docs/interface/capabilities.md
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Expand Up @@ -25,16 +25,14 @@ You can do direct classification in the GUI. The following types of classificati
* **Groups**: Groups can be created.
* **Ground truth cell types**: Ground truth data can be analysed directly in the GUI.

## Monosynaptic connections
### Monosynaptic connections
Monosynaptic connections are determined in the pipeline, and you can visualize the connections in the GUI and redo the manual curation directly from the GUI. You can adjust connections from the Cell Explorer by launching the monosyn interface. [Please see the tutorial on manual curation of monosynaptic connections]({{"/tutorials/monosynaptic-connections-tutorial/"|absolute_url}}).

### Interface for monosynaptic connections curation
![](https://buzsakilab.com/wp/wp-content/uploads/2020/02/monosyn.png)
![](https://buzsakilab.com/wp/wp-content/uploads/2020/02/monosyn.png){: .mt-4}

### Interface for deep-superfial classification curation
![](https://buzsakilab.com/wp/wp-content/uploads/2020/02/gui_deepSuperficial.png){: .mt-4}

## Database capabilities
### Database capabilities
The Cell Explorer is capable of loading datasets from and writing to the Buzsaki lab database. Please setup your credentials and local paths as [described here]({{"/database/preparation/"|absolute_url}}).

### Reference data
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8 changes: 7 additions & 1 deletion docs/tutorials/export-figure.md
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{: .no_toc}
Exporting figures in Matlab can be a headache, so here are two small tutorials to help with this: exporting the main interface and individual actions plots.

## Table of contents
{: .no_toc .text-delta }

1. TOC
{:toc}

## Exporting the Cell Explorer interface
The steps below shows how to save a PDF file of the main interface of the Cell Explorer. Saving a PNG (image file) is more straight forward.

Expand Down Expand Up @@ -38,4 +44,4 @@ When you select to save your figures to the Cell Explorer path or Clustering pat
Be aware that saving pdf files, is substantial slower than saving png files, but the figures will be saved with vector graphics.

## Exporting remaining figures
Any other figures produced by the Cell Explorer can be saved in similar fashion using the File menu options `Save As` or `Export Setup...`.
Any other figures produced by the Cell Explorer can be saved using the File menu options `Save As` or `Export Setup...`.

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