Open Problems in Single-Cell Analysis

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30 packages

base_python
Published Jun 13, 2023 by Open Problems in Single-Cell Analysis in openproblems-bio/base_images

86.3k
base_r
Published Jun 13, 2023 by Open Problems in Single-Cell Analysis in openproblems-bio/base_images

24.7k
h5ad/extract_uns_metadata
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

8.09k
utils/extract_uns_metadata
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

7.52k
data_processors/precompute_clustering_run
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.84k
metrics/kbet
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.65k
metrics/clustering_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.51k
data_processors/transform
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.48k
metrics/isolated_label_f1
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.46k
metrics/asw_label
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.28k
metrics/isolated_label_asw
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.28k
metrics/lisi
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.23k
metrics/graph_connectivity
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.21k
metrics/asw_batch
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.16k
metrics/pcr
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.15k
metrics/cell_cycle_conservation
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

2.1k
metrics/regression_2
Published Aug 1, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

1.79k
schema/verify_data_structure
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/core

1.29k
validation/check_dataset_with_schema
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

1.09k
metrics/f1
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

1.06k
metrics/accuracy
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

1.04k
metrics/hvg_overlap
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

927
metrics/distance_correlation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

845
metrics/coranking
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

835
data_processors/precompute_clustering_merge
Published Jan 10, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

782
metrics/density_preservation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

723
metrics/ks_statistic_sc_features
Published Aug 15, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

706
process_datasets/generate_sim_spatialcluster
Published Aug 28, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

695
metrics/ws_distance
Published Jan 22, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

670
metrics/ks_statistic_gene_cell
Published Jul 26, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatial_simulators

668