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43 Open 207 Closed
43 Open 207 Closed
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Issues list

install error for neweast vamb with pip
#417 opened Mar 9, 2025 by guangingmai
1
Feature request: Ability to run BAM parsing, fitting and clustering independently
#414 opened Mar 7, 2025 by shiraz-shah
1
Documentation improvements for 5.1
#410 opened Mar 5, 2025 by jakobnissen
4 tasks
Version 5.1
Question: Custom clustering cutoff? investigation Discussion about metagenomics or binning
#406 opened Mar 4, 2025 by shiraz-shah
4
Question: Contig kmer counts instead of mapping?? investigation Discussion about metagenomics or binning
#405 opened Mar 4, 2025 by shiraz-shah
2
Out of cuda memory on 24 GB gpu and 200-sample data set Needs more info Issue cannot be resolved until we get more information
#401 opened Mar 2, 2025 by shiraz-shah
4
das_tool for handling avamb multi-bin contigs? investigation Discussion about metagenomics or binning
#381 opened Dec 29, 2024 by aistBMRG
2
multisplit and or single-sample investigation Discussion about metagenomics or binning
#368 opened Nov 13, 2024 by sheaster
3
Help needed for RuntimeError: size of tensor a must match the size of tensor b Needs more info Issue cannot be resolved until we get more information
#364 opened Oct 3, 2024 by MapleHe
3
[Suggestion] Include a way to wash and sort lineage output from MMSeqs2
#361 opened Sep 14, 2024 by Prunoideae
Do not store data multiple times in memory if possible
#354 opened Aug 28, 2024 by jakobnissen
ValueError: Length of TNFs and length of RPKM does not match. Verify the inputs
#352 opened Aug 7, 2024 by shaman-narayanasamy
3
How can we know which contig belongs to the bins
#351 opened Jul 31, 2024 by StickHu
2
Where does the variance come from?
#331 opened Jul 3, 2024 by jakobnissen
@Las02
Test various abundance estimation parameters
#330 opened Jul 2, 2024 by jakobnissen
@Las02
1
A file to map the bins and samples
#320 opened May 10, 2024 by WeimingWHu
1
write_clusters_from_nc_folders exit with error on SLURM but ran successfully on command line
#319 opened May 10, 2024 by WeimingWHu
1
Missing output files
#316 opened Apr 28, 2024 by B1991ing
1
Error during "creating z y v clusters from the final set of bins" avamb workflow
#297 opened Mar 10, 2024 by eperezv
@Paupiera
10
Could not install the latest version of vamb using conda or pip
#294 opened Feb 24, 2024 by quliping
3
Add Windows support upstream Bug is in a dependency of Vamb
#288 opened Feb 10, 2024 by enryH
6
NC bins Needs more info Issue cannot be resolved until we get more information
#287 opened Jan 30, 2024 by LorrieMacc
2
COMEBin comparison investigation Discussion about metagenomics or binning
#286 opened Jan 19, 2024 by jsgounot
6
Optimise hyperparams: Medoid radius and default radius
#258 opened Nov 10, 2023 by jakobnissen
@Las02
1
AAE mode taking too long for clustering and tsv file generation
#232 opened Oct 24, 2023 by microbiomix
4
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