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    • Nextflow
      Other
      1837171Updated Mar 7, 2025Mar 7, 2025
    • Nextflow workflow template repository
      Python
      Other
      351810Updated Mar 7, 2025Mar 7, 2025
    • HTML
      2800Updated Mar 7, 2025Mar 7, 2025
    • ezcharts

      Public
      Python
      Other
      11800Updated Mar 7, 2025Mar 7, 2025
    • HTML
      0000Updated Mar 5, 2025Mar 5, 2025
    • Nextflow
      Other
      57112300Updated Mar 5, 2025Mar 5, 2025
    • Python
      Other
      4183130Updated Mar 3, 2025Mar 3, 2025
    • bed-bugs

      Public
      bed-bugs website
      JavaScript
      0000Updated Feb 28, 2025Feb 28, 2025
    • Nextflow
      Other
      0210Updated Feb 25, 2025Feb 25, 2025
    • Python
      Other
      212970Updated Feb 21, 2025Feb 21, 2025
    • Nextflow
      Other
      1118110Updated Feb 18, 2025Feb 18, 2025
    • Small variant calling for haploid samples
      Python
      Other
      1632101Updated Feb 14, 2025Feb 14, 2025
    • wf-aav-qc

      Public
      Python
      Other
      8590Updated Feb 14, 2025Feb 14, 2025
    • wf-cas9

      Public
      Nextflow
      Other
      2630Updated Feb 14, 2025Feb 14, 2025
    • Metagenomic classification of long-read sequencing data
      Python
      Other
      257600Updated Feb 14, 2025Feb 14, 2025
    • wf-mpx

      Public
      Nextflow
      Other
      6510Updated Feb 14, 2025Feb 14, 2025
    • wf-pore-c

      Public
      Nextflow
      Other
      93760Updated Feb 14, 2025Feb 14, 2025
    • wf-flu

      Public
      Nextflow
      Other
      51720Updated Feb 14, 2025Feb 14, 2025
    • Python
      Other
      83040Updated Feb 13, 2025Feb 13, 2025
    • Nextflow
      Other
      212840Updated Feb 13, 2025Feb 13, 2025
    • Nextflow
      Other
      3588210Updated Jan 3, 2025Jan 3, 2025
    • wf-16s

      Public
      Nextflow
      Other
      52930Updated Dec 16, 2024Dec 16, 2024
    • fastcat

      Public
      Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
      C
      Other
      43520Updated Dec 5, 2024Dec 5, 2024
    • wf-artic

      Public
      ARTIC SARS-CoV-2 workflow and reporting
      Nextflow
      Other
      355070Updated Dec 3, 2024Dec 3, 2024
    • wf-tb-amr

      Public
      Python
      Other
      0410Updated Oct 18, 2024Oct 18, 2024
    • C
      Other
      84800Updated Aug 23, 2024Aug 23, 2024
    • pore-c-py

      Public
      Python
      Other
      41310Updated Aug 14, 2024Aug 14, 2024
    • pychopper

      Public
      cDNA read preprocessing
      Python
      Other
      96590Updated Jul 25, 2024Jul 25, 2024
    • Kraken2 Server
      C++
      Other
      42110Updated Jan 23, 2024Jan 23, 2024
    • igv-jupyterlab

      Public archive
      Integrate Genome Viewer for JupyterLab 3
      Python
      BSD 3-Clause "New" or "Revised" License
      1900Updated Aug 25, 2023Aug 25, 2023