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I have installed the spower and working fine with sfs file and generating simulations. But when I download the .gdat file from http://bioinformatics.org/spower/download/data/SRV/, I am getting a 5DF5 error.
spower -h
usage: spower [-h] [--version]
{simulate,LOGIT,PAR,BLNR,LNR,ELNR,show,execute} ...
SEQPower, Power Analysis and Sample Size Estimation Software for Sequence
Based Association Studies
positional arguments:
{simulate,LOGIT,PAR,BLNR,LNR,ELNR,show,execute}
simulate Simulate DNA sequences
LOGIT Case control data, penetrance model
PAR Case control data, population attributable risk model
BLNR Case control data, quantitative trait loci model
LNR Quantitative trait data
ELNR Extreme quantitative trait data
show Display various information
execute Execute a parameter configuration file
optional arguments:
-h, --help show this help message and exit
--version show program's version number and exit
Copyright (c) 2013 Gao Wang <[email protected]> under GNU General Public License |
http://bioinformatics.org/spower
Seems the docker is working fine. But when running an actual command, I am getting the same error as above
``INFO: Loading data from [Kryukov2009European1800Rep500.gdat] ...
ERROR: HDF5 error back trace
File "H5F.c", line 586, in H5Fopen
unable to open file
File "H5Fint.c", line 1384, in H5F_open
unable to read superblock
File "H5Fsuper.c", line 360, in H5F__super_read
file signature not found
End of HDF5 error backtrace
Unable to open/create file 'Kryukov2009European1800Rep500.gdat'
File "H5F.c", line 586, in H5Fopen
unable to open file
File "H5Fint.c", line 1384, in H5F_open
unable to read superblock
File "H5Fsuper.c", line 360, in H5F__super_read
file signature not found
End of HDF5 error back trace
Unable to open/create file 'KIT.gdat'
The text was updated successfully, but these errors were encountered:
I have installed the spower and working fine with
sfs
file and generating simulations. But when I download the.gdat
file fromhttp://bioinformatics.org/spower/download/data/SRV/
, I am getting a 5DF5 error.Seems the docker is working fine. But when running an actual command, I am getting the same error as above
``INFO: Loading data from [Kryukov2009European1800Rep500.gdat] ...
ERROR: HDF5 error back trace
File "H5F.c", line 586, in H5Fopen
unable to open file
File "H5Fint.c", line 1384, in H5F_open
unable to read superblock
File "H5Fsuper.c", line 360, in H5F__super_read
file signature not found
End of HDF5 error backtrace
Unable to open/create file 'Kryukov2009European1800Rep500.gdat'
spower LOGIT KIT.gdat -a 1.5 --sample_size 2000 --alpha 0.05 -v2 -o K1AP --method CFisher Calpha --permutations 1000 BurdenBt KBAC --permutations 1000 WSSRankTest --permutations 1000 VTtest --permutations 1000 -r 100 -j8
INFO: Loading data from [KIT.gdat] ...
ERROR: HDF5 error back trace
File "H5F.c", line 586, in H5Fopen
unable to open file
File "H5Fint.c", line 1384, in H5F_open
unable to read superblock
File "H5Fsuper.c", line 360, in H5F__super_read
file signature not found
End of HDF5 error back trace
Unable to open/create file 'KIT.gdat'
The text was updated successfully, but these errors were encountered: