Create 'runtimes' folder in "dnu publish" output

[ChengTian]

Today, when you kpm bundle an app with runtime included, runtime is bundled to

<OutputRoot>/approot/packages

which also contains all other NuGet packages used by the app. It’s not consistent with structure of $KRE_HOME, which has

a. $KRE_HOME/packages for NuGet packages
b. $KRE_HOME/runtimes for runtime folders

To be more consistent, kpm bundle output should have the same structure:

a. <OutputRoot>/approot/runtimes
b. <OutputRoot>/approot/packages