Output of kpm pack is missing some packages

[balaTest]

Dev14 CTP2 build (WTE.10612)

SETUP REPRO (to simplify the repro steps)

1. Create new vNext web application (StarterWeb template)
2. Close VS
3. Delete the packages folder on disk
4. Delete k10 configuration from project.json, so that only net451 is left
   "configurations": {
   "net451" : { }
   }

REPRO STEPS

1. Re-open project in VS and let package restore complete
2. Publish to File System to C:\PublishOut\P1
   (or)
   Run this from a command prompt

"C:\Users\fwtlaba\.kre\packages\kre-svr50-x86.0.1-alpha-build-0511\bin\kpm.cmd" pack --runtime "C:\Users\fwtlaba\.kre\packages\kre-svr50-x86.0.1-alpha-build-0511" --out "C:\PublishOut\cmd1" --appfolder wwwroot --overwrite

1. Open command prompt, run web.cmd under the published output folder

ACTUAL
Running web.cmd shows the following error.

If I manually copy over the missing packages, then web.cmd works just fine.

EXPECTED
Running web.cmd should just work

[Eilon]

@davidfowl @lodejard putting this on your radar per the email thread.

[davidfowl]

I'm looking at it